A B C D E F G I J L M N O P R S T V W _

G

gcContent - Variable in class webservices.Genome

gen - Variable in class experiments.Exp

gen - Variable in class webservices.Exp

genArr - Variable in class webservices.Genome

genFile - Variable in class webservices.Genome

genFileName - Variable in class webservices.Genome

genLen - Variable in class webservices.Genome

Genome - Class in experiments

This class represents a genome.

Genome() - Constructor for class experiments.Genome

Generates an empty genome

Genome(File) - Constructor for class experiments.Genome

Generates an empty genome

Genome - Class in webservices

Java class for genome complex type.

Genome() - Constructor for class webservices.Genome

GenomeProcessorServ - Interface in webservices

This class was generated by the JAX-WS RI.

GenomeProcessorServService - Class in webservices

This class was generated by the JAX-WS RI.

GenomeProcessorServService() - Constructor for class webservices.GenomeProcessorServService

GenomeProcessorServService(WebServiceFeature...) - Constructor for class webservices.GenomeProcessorServService

GenomeProcessorServService(URL) - Constructor for class webservices.GenomeProcessorServService

GenomeProcessorServService(URL, WebServiceFeature...) - Constructor for class webservices.GenomeProcessorServService

GenomeProcessorServService(URL, QName) - Constructor for class webservices.GenomeProcessorServService

GenomeProcessorServService(URL, QName, WebServiceFeature...) - Constructor for class webservices.GenomeProcessorServService

GenomeSaveGui - Class in infogenomics

Enables the user to save a genome permutation as a fasta file

GenomeSaveGui() - Constructor for class infogenomics.GenomeSaveGui

Creates new form GenomeSaveGui

GenomeSaveGui(String, Exp) - Constructor for class infogenomics.GenomeSaveGui

Creates new form GenomeSaveGui

genStr - Variable in class webservices.Genome

getAheadWinLen() - Method in class experiments.ExpLZ77

getAheadWinLen() - Method in class webservices.ExpLZ77

Gets the value of the aheadWinLen property.

getArg0() - Method in class webservices.ComputeExpIndexesExp

Gets the value of the arg0 property.

getArg0() - Method in class webservices.ComputeExpIndexesExp1

Gets the value of the arg0 property.

getArg0() - Method in class webservices.ComputeExpIndexesLZ

Gets the value of the arg0 property.

getArg0() - Method in class webservices.ComputeExpIndexesTS

Gets the value of the arg0 property.

getArg0() - Method in class webservices.ComputeExpIndexesTSP

Gets the value of the arg0 property.

getArg0() - Method in class webservices.ComputeExpIndexesTSP1

Gets the value of the arg0 property.

getArg0() - Method in class webservices.PermuteGen

Gets the value of the arg0 property.

getArg0() - Method in class webservices.SubSeqBaseNum

Gets the value of the arg0 property.

getArg1() - Method in class webservices.ComputeExpIndexesTSP1

Gets the value of the arg1 property.

getArg1() - Method in class webservices.SubSeqBaseNum

Gets the value of the arg1 property.

getArg2() - Method in class webservices.ComputeExpIndexesTSP1

Gets the value of the arg2 property.

getArg2() - Method in class webservices.SubSeqBaseNum

Gets the value of the arg2 property.

getArg3() - Method in class webservices.ComputeExpIndexesTSP1

Gets the value of the arg3 property.

getCompFactor() - Method in class compressors.LZ77v02

getCompFactor() - Method in class webservices.Lz77V02

Gets the value of the compFactor property.

getCompressionFactor() - Method in class compressors.LZ77v01

Performs an analysis of the compression between rawData and encodedData, prints the results and returns the compression factor.

getDescription() - Method in class infogenomics.FastaFilter

getDescription() - Method in class othertools.Dictionary

getDicEntry() - Method in class webservices.TupleExt

Gets the value of the dicEntry property.

getDict() - Method in class compressors.LZ77v02

getDict() - Method in class webservices.Lz77V02

Gets the value of the dict property.

getDm() - Method in class webservices.TolTest

Gets the value of the dm property.

getEncodedData() - Method in class compressors.LZ77v01

getEncodedData() - Method in class compressors.LZ77v02

getEncodedData() - Method in class webservices.Lz77V02

Gets the value of the encodedData property.

getEntries() - Method in class compressors.LZ77Dictionary

getEntry(int) - Method in class compressors.LZ77Dictionary

getExpLZ77ProcessorServPort() - Method in class webservices.ExpLZ77ProcessorServService

getExpLZ77ProcessorServPort(WebServiceFeature...) - Method in class webservices.ExpLZ77ProcessorServService

getExpProcessorServPort() - Method in class webservices.ExpProcessorServService

getExpProcessorServPort(WebServiceFeature...) - Method in class webservices.ExpProcessorServService

getExpTypSeqProcessorServPort() - Method in class webservices.ExpTypSeqProcessorServService

getExpTypSeqProcessorServPort(WebServiceFeature...) - Method in class webservices.ExpTypSeqProcessorServService

getExpTypSeqProfProcessorServPort() - Method in class webservices.ExpTypSeqProfProcessorServService

getExpTypSeqProfProcessorServPort(WebServiceFeature...) - Method in class webservices.ExpTypSeqProfProcessorServService

getfA() - Method in class experiments.Genome

getfA() - Method in class othertools.Dictionary

getFA() - Method in class webservices.Genome

Gets the value of the fa property.

getfC() - Method in class experiments.Genome

getfC() - Method in class othertools.Dictionary

getFC() - Method in class webservices.Genome

Gets the value of the fc property.

getfG() - Method in class experiments.Genome

getfG() - Method in class othertools.Dictionary

getFG() - Method in class webservices.Genome

Gets the value of the fg property.

getfT() - Method in class experiments.Genome

getfT() - Method in class othertools.Dictionary

getFT() - Method in class webservices.Genome

Gets the value of the ft property.

getGcContent() - Method in class experiments.Genome

getGcContent() - Method in class webservices.Genome

Gets the value of the gcContent property.

getGen() - Method in class experiments.Exp

getGen() - Method in class webservices.Exp

Gets the value of the gen property.

getGenArr() - Method in class experiments.Genome

getGenArr() - Method in class webservices.Genome

Gets the value of the genArr property.

getGenFile() - Method in class experiments.Genome

getGenFile() - Method in class webservices.Genome

Gets the value of the genFile property.

getGenFileName() - Method in class experiments.Genome

getGenFileName() - Method in class webservices.Genome

Gets the value of the genFileName property.

getGenLen() - Method in class experiments.Genome

getGenLen() - Method in class webservices.Genome

Gets the value of the genLen property.

getGenomeProcessorServPort() - Method in class webservices.GenomeProcessorServService

getGenomeProcessorServPort(WebServiceFeature...) - Method in class webservices.GenomeProcessorServService

getGenStr() - Method in class experiments.Genome

getGenStr() - Method in class webservices.Genome

Gets the value of the genStr property.

getItem() - Method in class net.java.dev.jaxb.array.DoubleArray

Gets the value of the item property.

getJump() - Method in class experiments.ExpTypSeq

getJump() - Method in class webservices.ExpTypSeq

Gets the value of the jump property.

getLen() - Method in class webservices.Lz77DictEntry

Gets the value of the len property.

getLengths() - Method in class experiments.ExpTypSeqProf

getLengths() - Method in class webservices.ExpTypSeqProf

Gets the value of the lengths property.

getLens() - Method in class experiments.ExpTypSeqProf

getLens() - Method in class webservices.ExpTypSeqProf

Gets the value of the lens property.

getLookAheadWindowLen() - Method in class compressors.LZ77v01

getLookAheadWindowLen() - Method in class compressors.LZ77v02

getLookAheadWindowLen() - Method in class webservices.Lz77V02

Gets the value of the lookAheadWindowLen property.

getLZ77compressions() - Method in class experiments.ExpLZ77

getLZ77Compressions() - Method in class webservices.ExpLZ77

Gets the value of the lz77Compressions property.

getLz77TestId() - Method in class compressors.LZ77v02

getLz77TestId() - Method in class webservices.Lz77V02

Gets the value of the lz77TestId property.

getMaxLen() - Method in class othertools.Dictionary

getMaxWordIndex() - Method in class compressors.LZ77Dictionary

getMaxWordIndex() - Method in class webservices.Lz77Dictionary

Gets the value of the maxWordIndex property.

getMaxWordLen() - Method in class compressors.LZ77Dictionary

getMaxWordLen() - Method in class webservices.Lz77Dictionary

Gets the value of the maxWordLen property.

getMeanWordLen() - Method in class compressors.LZ77Dictionary

getMeanWordLen() - Method in class webservices.Lz77Dictionary

Gets the value of the meanWordLen property.

getMinLen() - Method in class experiments.ExpTypSeq

getMinLen() - Method in class othertools.Dictionary

getMinLen() - Method in class webservices.ExpTypSeq

Gets the value of the minLen property.

getnA() - Method in class experiments.Genome

getNA() - Method in class webservices.Genome

Gets the value of the na property.

getName() - Method in class othertools.Dictionary

getnC() - Method in class experiments.Genome

getNC() - Method in class webservices.Genome

Gets the value of the nc property.

getNextChar() - Method in class webservices.TupleExt

Gets the value of the nextChar property.

getnG() - Method in class experiments.Genome

getNG() - Method in class webservices.Genome

Gets the value of the ng property.

getnLens() - Method in class experiments.ExpTypSeqProf

getNLens() - Method in class webservices.ExpTypSeqProf

Gets the value of the nLens property.

getNOccur() - Method in class webservices.Lz77DictEntry

Gets the value of the nOccur property.

getnT() - Method in class experiments.Genome

getNT() - Method in class webservices.Genome

Gets the value of the nt property.

getNumberOfWords() - Method in class compressors.LZ77Dictionary

getNumberOfWords() - Method in class webservices.Lz77Dictionary

Gets the value of the numberOfWords property.

getnWords() - Method in class othertools.Dictionary

getOccurences() - Method in class experiments.TolTest

getOccurences() - Method in class webservices.TolTest

Gets the value of the occurences property.

getOffset() - Method in class webservices.TupleExt

Gets the value of the offset property.

getPos() - Method in class webservices.Lz77DictEntry

Gets the value of the pos property.

getRawData() - Method in class compressors.LZ77v01

getRawData() - Method in class compressors.LZ77v02

getRawData() - Method in class webservices.Lz77V02

Gets the value of the rawData property.

getReturn() - Method in class webservices.ComputeExpIndexesExp1Response

Gets the value of the return property.

getReturn() - Method in class webservices.ComputeExpIndexesExpResponse

Gets the value of the return property.

getReturn() - Method in class webservices.ComputeExpIndexesLZResponse

Gets the value of the return property.

getReturn() - Method in class webservices.ComputeExpIndexesTSP1Response

Gets the value of the return property.

getReturn() - Method in class webservices.ComputeExpIndexesTSPResponse

Gets the value of the return property.

getReturn() - Method in class webservices.ComputeExpIndexesTSResponse

Gets the value of the return property.

getReturn() - Method in class webservices.PermuteGenResponse

Gets the value of the return property.

getReturn() - Method in class webservices.SubSeqBaseNumResponse

Gets the value of the return property.

getRowIndex() - Method in class webservices.DataModel

Gets the value of the rowIndex property.

getSearchWindowLen() - Method in class compressors.LZ77v01

getSearchWindowLen() - Method in class compressors.LZ77v02

getSearchWindowLen() - Method in class webservices.Lz77V02

Gets the value of the searchWindowLen property.

getSearchWinLen() - Method in class experiments.ExpLZ77

getSearchWinLen() - Method in class webservices.ExpLZ77

Gets the value of the searchWinLen property.

getStringLen() - Method in class webservices.TupleExt

Gets the value of the stringLen property.

getTests() - Method in class experiments.ExpTypSeqProf

getTests() - Method in class webservices.ExpTypSeqProf

Gets the value of the tests property.

getTol() - Method in class experiments.ExpTypSeq

getTol() - Method in class experiments.ExpTypSeqProf

getTol() - Method in class experiments.TolTest

getTol() - Method in class webservices.ExpTypSeq

Gets the value of the tol property.

getTol() - Method in class webservices.ExpTypSeqProf

Gets the value of the tol property.

getTol() - Method in class webservices.TolTest

Gets the value of the tol property.

getTypSeqs() - Method in class experiments.ExpTypSeq

getTypSeqs() - Method in class webservices.ExpTypSeq

Gets the value of the typSeqs property.

getValue() - Method in class webservices.TolTest

Gets the value of the value property.

getWord() - Method in class webservices.Lz77DictEntry

Gets the value of the word property.

getWords() - Method in class othertools.Dictionary

getWrappedData() - Method in class webservices.DataModel

Gets the value of the wrappedData property.