experiments
Class ExpLZ77

java.lang.Object
  experiments.Exp
      experiments.ExpLZ77

public class ExpLZ77
extends Exp

This class represents an experiment in which LZ77 compression factors are computed. It contains a Genome variable called gen (inherited from Exp) andthree other fields: INPUTS: int[] searchWinLen (a set of lengths used for the search window [lenIni,lenFin,lenStep]) and int[] aheadWinLen (a set of lengths used for the ahead window [lenIni,lenFin,lenStep]) OUTPUT: Vector LZ77compressions (a set of result objects of type LZ77v02, each representing the result obtained with one combination of searchWinLen-aheadWinLen) In order to be launched an experiment must have set the genome, the field searchWinLen and the field aheadWinLen.

Field Summary

Fields inherited from class experiments.Exp

gen

Constructor Summary

ExpLZ77()
Empty constructor

ExpLZ77(java.io.File f)
Constructs an ExpLZ77 experiment having genome set to the genome sequence in file f (fasta format)

ExpLZ77(java.io.File f, int[] searchWinIn, int[] aheadWinIn)
Generates an experiment for LZ77 compression factor given the genome file f

ExpLZ77(Genome g, int[] searchWinIn, int[] aheadWinIn)
Generates an experiment for LZ77 compression factor given the genome g

Method Summary

int[]	getAheadWinLen()
java.util.Vector<LZ77v02>	getLZ77compressions()
int[]	getSearchWinLen()
void	setAheadWinLen(int[] aheadWinLen)
void	setLZ77compressions(java.util.Vector<LZ77v02> LZ77compressions)
void	setSearchWinLen(int[] searchWinLen)

Methods inherited from class experiments.Exp

getGen, setGen

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ExpLZ77

public ExpLZ77()

Empty constructor

ExpLZ77

public ExpLZ77(java.io.File f)

Constructs an ExpLZ77 experiment having genome set to the genome sequence in file f (fasta format)

ExpLZ77

public ExpLZ77(java.io.File f,
               int[] searchWinIn,
               int[] aheadWinIn)

Generates an experiment for LZ77 compression factor given the genome file f

ExpLZ77

public ExpLZ77(Genome g,
               int[] searchWinIn,
               int[] aheadWinIn)

Generates an experiment for LZ77 compression factor given the genome g

Method Detail

getSearchWinLen

public int[] getSearchWinLen()

Returns:

the searchWinLen

setSearchWinLen

public void setSearchWinLen(int[] searchWinLen)

Parameters:

searchWinLen - the searchWinLen to set

getAheadWinLen

public int[] getAheadWinLen()

Returns:

the aheadWinLen

setAheadWinLen

public void setAheadWinLen(int[] aheadWinLen)

Parameters:

aheadWinLen - the aheadWinLen to set

getLZ77compressions

public java.util.Vector<LZ77v02> getLZ77compressions()

Returns:

the LZ77compressions

setLZ77compressions

public void setLZ77compressions(java.util.Vector<LZ77v02> LZ77compressions)

Parameters:

LZ77compressions - the LZ77compressions to set