othertools
Class Dictionary

java.lang.Object
  othertools.Dictionary

public class Dictionary
extends java.lang.Object

This class represents a dictionary od words. It contains a set of words (words), the dictionary name (name) and description (description), the minimum and maximum word length (minLen, maxLen), the number of words (nWords) in the dictionary and the frequence of each nucleotyde in all dictionary.

Constructor Summary

Dictionary()

Method Summary

java.lang.String	getDescription()
double	getfA()
double	getfC()
double	getfG()
double	getfT()
int	getMaxLen()
int	getMinLen()
java.lang.String	getName()
int	getnWords()
java.util.Vector<java.lang.String>	getWords()
void	setDescription(java.lang.String description)
void	setfA(double fA)
void	setfC(double fC)
void	setfG(double fG)
void	setfT(double fT)
void	setMaxLen(int maxLen)
void	setMinLen(int minLen)
void	setName(java.lang.String name)
void	setnWords(int nWords)
void	setWords(java.util.Vector<java.lang.String> words)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

Dictionary

public Dictionary()

Method Detail

getWords

public java.util.Vector<java.lang.String> getWords()

Returns:

the words

setWords

public void setWords(java.util.Vector<java.lang.String> words)

Parameters:

words - the words to set

getName

public java.lang.String getName()

Returns:

the name

setName

public void setName(java.lang.String name)

Parameters:

name - the name to set

getDescription

public java.lang.String getDescription()

Returns:

the description

setDescription

public void setDescription(java.lang.String description)

Parameters:

description - the description to set

getfA

public double getfA()

Returns:

the fA

setfA

public void setfA(double fA)

Parameters:

fA - the fA to set

getfT

public double getfT()

Returns:

the fT

setfT

public void setfT(double fT)

Parameters:

fT - the fT to set

getfC

public double getfC()

Returns:

the fC

setfC

public void setfC(double fC)

Parameters:

fC - the fC to set

getfG

public double getfG()

Returns:

the fG

setfG

public void setfG(double fG)

Parameters:

fG - the fG to set

getMinLen

public int getMinLen()

Returns:

the minLen

setMinLen

public void setMinLen(int minLen)

Parameters:

minLen - the minLen to set

getMaxLen

public int getMaxLen()

Returns:

the maxLen

setMaxLen

public void setMaxLen(int maxLen)

Parameters:

maxLen - the maxLen to set

getnWords

public int getnWords()

Returns:

the nWords

setnWords

public void setnWords(int nWords)

Parameters:

nWords - the nWords to set