A B C D E F G I J L M N O P R S T V W _

E

encode() - Method in class compressors.LZ77v01

Encodes string rawData, stores the encoded data in encodedData and returns encodedData

encode() - Method in class compressors.LZ77v02

Encodes string rawData, stores the encoded data in encodedData and returns encodedData

encodedData - Variable in class webservices.Lz77V02

Exp - Class in experiments

This class represents a basic experiment.

Exp() - Constructor for class experiments.Exp

Generates an empty experiment (empty genome)

Exp(File) - Constructor for class experiments.Exp

Generates an experiment which refers to the genome in fasta file f

exp - Variable in class infogenomics.GenomeSaveGui

Exp - Class in webservices

Java class for exp complex type.

Exp() - Constructor for class webservices.Exp

ExpAnalysisGui - Class in analysis.analysisguis

Gui for analyzing Exp experiments

ExpAnalysisGui() - Constructor for class analysis.analysisguis.ExpAnalysisGui

Creates new form ExpAnalysisGui

ExpAnalysisGui(String) - Constructor for class analysis.analysisguis.ExpAnalysisGui

Creates new form ExpAnalysisGui

experiments - package experiments

expinputguis - package expinputguis

ExpLZ77 - Class in experiments

This class represents an experiment in which LZ77 compression factors are computed.

ExpLZ77() - Constructor for class experiments.ExpLZ77

Empty constructor

ExpLZ77(File) - Constructor for class experiments.ExpLZ77

Constructs an ExpLZ77 experiment having genome set to the genome sequence in file f (fasta format)

ExpLZ77(File, int[], int[]) - Constructor for class experiments.ExpLZ77

Generates an experiment for LZ77 compression factor given the genome file f

ExpLZ77(Genome, int[], int[]) - Constructor for class experiments.ExpLZ77

Generates an experiment for LZ77 compression factor given the genome g

ExpLZ77 - Class in webservices

Java class for expLZ77 complex type.

ExpLZ77() - Constructor for class webservices.ExpLZ77

ExpLZ77AnalysisGui - Class in analysis.analysisguis

Gui for analyzing ExpLZ77 experiments

ExpLZ77AnalysisGui() - Constructor for class analysis.analysisguis.ExpLZ77AnalysisGui

Creates new form ExpLZ77AnalysisGui

ExpLZ77AnalysisGui(String) - Constructor for class analysis.analysisguis.ExpLZ77AnalysisGui

Creates new form ExpAnalysisGui

ExpLZ77ProcessorServ - Interface in webservices

This class was generated by the JAX-WS RI.

ExpLZ77ProcessorServService - Class in webservices

This class was generated by the JAX-WS RI.

ExpLZ77ProcessorServService() - Constructor for class webservices.ExpLZ77ProcessorServService

ExpLZ77ProcessorServService(WebServiceFeature...) - Constructor for class webservices.ExpLZ77ProcessorServService

ExpLZ77ProcessorServService(URL) - Constructor for class webservices.ExpLZ77ProcessorServService

ExpLZ77ProcessorServService(URL, WebServiceFeature...) - Constructor for class webservices.ExpLZ77ProcessorServService

ExpLZ77ProcessorServService(URL, QName) - Constructor for class webservices.ExpLZ77ProcessorServService

ExpLZ77ProcessorServService(URL, QName, WebServiceFeature...) - Constructor for class webservices.ExpLZ77ProcessorServService

export(File, int) - Method in class analysis.ExpSearchGui

Exporter - Class in analysis

Each method of this class performs the exportation of an experiment to a file having a specific format

Exporter() - Constructor for class analysis.Exporter

ExportGui - Class in analysis

It enables the user to choose the format and the file to which the experiment is exported, and to launch the exportation.

ExportGui() - Constructor for class analysis.ExportGui

Creates new form ExportGui

ExportGui(ExpSearchGui) - Constructor for class analysis.ExportGui

exportTxtMatlab(File) - Method in class analysis.ExpSearchGui

Performs the exportation of an experiment to a text file which can be loaded by Matlab

exportTypSeqProf2MatlabTxt(String, File) - Method in class analysis.Exporter

exportTypSeqProf2Txt(String, File) - Method in class analysis.Exporter

ExpProcessorServ - Interface in webservices

This class was generated by the JAX-WS RI.

ExpProcessorServService - Class in webservices

This class was generated by the JAX-WS RI.

ExpProcessorServService() - Constructor for class webservices.ExpProcessorServService

ExpProcessorServService(WebServiceFeature...) - Constructor for class webservices.ExpProcessorServService

ExpProcessorServService(URL) - Constructor for class webservices.ExpProcessorServService

ExpProcessorServService(URL, WebServiceFeature...) - Constructor for class webservices.ExpProcessorServService

ExpProcessorServService(URL, QName) - Constructor for class webservices.ExpProcessorServService

ExpProcessorServService(URL, QName, WebServiceFeature...) - Constructor for class webservices.ExpProcessorServService

ExpSearchGui - Class in analysis

This gui shows all the exeriments stored in the db.

ExpSearchGui() - Constructor for class analysis.ExpSearchGui

Creates new form ExpSearchGui

ExpStoreGui - Class in storeguis

This gui enables the user to save an Exp experiment into database.

ExpStoreGui() - Constructor for class storeguis.ExpStoreGui

Creates new form ExpStoreGui

ExpStoreGui(Exp) - Constructor for class storeguis.ExpStoreGui

Creates new form ExpStoreGui

ExpTypSeq - Class in experiments

This class represents an experiment in which typical sequences are computed.

ExpTypSeq() - Constructor for class experiments.ExpTypSeq

Empty constructor

ExpTypSeq(File) - Constructor for class experiments.ExpTypSeq

Constructs an ExpTypSeq experiment having genome set to the genome sequence in file f (fasta format)

ExpTypSeq(File, double[], int[], int[]) - Constructor for class experiments.ExpTypSeq

Generates an experiment for typical sequences

ExpTypSeq(Genome, double[], int[], int[]) - Constructor for class experiments.ExpTypSeq

Generates an experiment for typical sequences starting from a preloaded Genome object

ExpTypSeq - Class in webservices

Java class for expTypSeq complex type.

ExpTypSeq() - Constructor for class webservices.ExpTypSeq

ExpTypSeqAnalysisGui - Class in analysis.analysisguis

Gui for analyzing ExpTypSeq experiments

ExpTypSeqAnalysisGui() - Constructor for class analysis.analysisguis.ExpTypSeqAnalysisGui

Creates new form ExpTypSeqAnalysisGui

ExpTypSeqAnalysisGui(String) - Constructor for class analysis.analysisguis.ExpTypSeqAnalysisGui

Creates new form ExpAnalysisGui

ExpTypSeqProcessorServ - Interface in webservices

This class was generated by the JAX-WS RI.

ExpTypSeqProcessorServService - Class in webservices

This class was generated by the JAX-WS RI.

ExpTypSeqProcessorServService() - Constructor for class webservices.ExpTypSeqProcessorServService

ExpTypSeqProcessorServService(WebServiceFeature...) - Constructor for class webservices.ExpTypSeqProcessorServService

ExpTypSeqProcessorServService(URL) - Constructor for class webservices.ExpTypSeqProcessorServService

ExpTypSeqProcessorServService(URL, WebServiceFeature...) - Constructor for class webservices.ExpTypSeqProcessorServService

ExpTypSeqProcessorServService(URL, QName) - Constructor for class webservices.ExpTypSeqProcessorServService

ExpTypSeqProcessorServService(URL, QName, WebServiceFeature...) - Constructor for class webservices.ExpTypSeqProcessorServService

ExpTypSeqProf - Class in experiments

This class represents an experiment in which typical sequence profiles are computed.

ExpTypSeqProf() - Constructor for class experiments.ExpTypSeqProf

Empty constructor

ExpTypSeqProf(File) - Constructor for class experiments.ExpTypSeqProf

Constructs an ExpTypSeqProf experiment having genome set to the genome sequence in file f (fasta format)

ExpTypSeqProf(File, double[], int) - Constructor for class experiments.ExpTypSeqProf

Generates an experiment for typical sequences profiles in which the number of lengths to be tested are defined in field nLensIn.

ExpTypSeqProf(Genome, double[], int) - Constructor for class experiments.ExpTypSeqProf

Generates an experiment for typical sequences profiles starting from a preloaded Genome object.

ExpTypSeqProf(File, double[], int[]) - Constructor for class experiments.ExpTypSeqProf

Generates an experiment for typical sequences profiles in which the lengths to be tested are defined in field lengthsIn (lenIni, lenfin, lenStep).

ExpTypSeqProf(Genome, double[], int[]) - Constructor for class experiments.ExpTypSeqProf

Generates an experiment for typical sequences profiles starting from a preloaded Genome object.

ExpTypSeqProf - Class in webservices

Java class for expTypSeqProf complex type.

ExpTypSeqProf() - Constructor for class webservices.ExpTypSeqProf

ExpTypSeqProfAnalysisGui - Class in analysis.analysisguis

Gui for analyzing ExpTypSeqProf experiments

ExpTypSeqProfAnalysisGui() - Constructor for class analysis.analysisguis.ExpTypSeqProfAnalysisGui

Creates new form ExpStoreGui

ExpTypSeqProfAnalysisGui(String) - Constructor for class analysis.analysisguis.ExpTypSeqProfAnalysisGui

Creates new form ExpAnalysisGui

ExpTypSeqProfProcessorServ - Interface in webservices

This class was generated by the JAX-WS RI.

ExpTypSeqProfProcessorServService - Class in webservices

This class was generated by the JAX-WS RI.

ExpTypSeqProfProcessorServService() - Constructor for class webservices.ExpTypSeqProfProcessorServService

ExpTypSeqProfProcessorServService(WebServiceFeature...) - Constructor for class webservices.ExpTypSeqProfProcessorServService

ExpTypSeqProfProcessorServService(URL) - Constructor for class webservices.ExpTypSeqProfProcessorServService

ExpTypSeqProfProcessorServService(URL, WebServiceFeature...) - Constructor for class webservices.ExpTypSeqProfProcessorServService

ExpTypSeqProfProcessorServService(URL, QName) - Constructor for class webservices.ExpTypSeqProfProcessorServService

ExpTypSeqProfProcessorServService(URL, QName, WebServiceFeature...) - Constructor for class webservices.ExpTypSeqProfProcessorServService