A B C D E F G I J L M N O P R S T V W _

T

tests - Variable in class webservices.ExpTypSeqProf

tol - Variable in class experiments.TolTest

tol - Variable in class webservices.ExpTypSeq

tol - Variable in class webservices.ExpTypSeqProf

tol - Variable in class webservices.TolTest

TolTest - Class in experiments

This class represents a couple (tolerance-occurrences), where tolerance is the tolerance value used to compute typical sequences in an ExpTypSeqProf experiment and occurrences is the array containing in cell i the number of occurrences of typical sequences having a certain length (the length is contained in array length[i] in ExpTypSeqProf).

TolTest() - Constructor for class experiments.TolTest

Empty constructor

TolTest(double) - Constructor for class experiments.TolTest

Constructor of a TolTest having tol=tIn

TolTest(double, int[]) - Constructor for class experiments.TolTest

Constructor of a TolTest having tol=tIn and occurrences=occurrencesIn

TolTest - Class in webservices

Java class for tolTest complex type.

TolTest() - Constructor for class webservices.TolTest

toString() - Method in class compressors.Tuple

toString() - Method in class compressors.TupleExt

Tuple - Class in compressors

The purpose of this inner class is to provide a wrapper for the three critical data values that are produced during implementation of the LZ77 compression algorithm.

TupleExt - Class in compressors

This is an extension of class Tuple which adds the field dictEntry, a pointer to an entry in a LZ77Dict dictionary.

TupleExt - Class in webservices

Java class for tupleExt complex type.

TupleExt() - Constructor for class webservices.TupleExt

TypSeqExpStoreGui - Class in storeguis

This class is a gui which enables the user to save into database the result of ExpTypSeq experiments.

TypSeqExpStoreGui() - Constructor for class storeguis.TypSeqExpStoreGui

Creates new form ExpStoreGui

TypSeqExpStoreGui(ExpTypSeq) - Constructor for class storeguis.TypSeqExpStoreGui

Creates new form ExpStoreGui

TypSeqInputGui - Class in expinputguis

Input Gui by which the user can setup parameters employed during the computation of typical sequences.

TypSeqInputGui() - Constructor for class expinputguis.TypSeqInputGui

Creates new form InputGUI

TypSeqInputGui(Exp) - Constructor for class expinputguis.TypSeqInputGui

Creates new form InputGUI with a related experiment containing genome's basic info

TypSeqProfExpStoreGui - Class in storeguis

This class is a gui which enables the user to save into database the result of ExpTypSeqProf experiments.

TypSeqProfExpStoreGui() - Constructor for class storeguis.TypSeqProfExpStoreGui

Creates new form ExpStoreGui

TypSeqProfExpStoreGui(ExpTypSeqProf) - Constructor for class storeguis.TypSeqProfExpStoreGui

Creates new form ExpStoreGui

TypSeqProfInputGui - Class in expinputguis

Input Gui by which the user can setup parameters employed during the computation of typical sequence profiles.

TypSeqProfInputGui() - Constructor for class expinputguis.TypSeqProfInputGui

Creates new form InputGUI

TypSeqProfInputGui(Exp) - Constructor for class expinputguis.TypSeqProfInputGui

Creates new form InputGUI with a related experiment containing genome's basic info

typSeqs - Variable in class webservices.ExpTypSeq