A B C D E F G I J L M N O P R S T V W _

S

searchWindowLen - Variable in class webservices.Lz77V02

searchWinLen - Variable in class webservices.ExpLZ77

selectAllDictionaryNames() - Method in class infogenomics.MySqlGenomesDbDAO

Selects from db the name of every dictionary

selectAllExperimentBasicInfo() - Method in class infogenomics.MySqlGenomesDbDAO

Selects all the basic info af every experiment in the db

selectCompressorDictionary(LZ77v02) - Method in class infogenomics.MySqlGenomesDbDAO

Selects from db words and positions related to LZ77 compressor comp

selectDictionary(String) - Method in class infogenomics.MySqlGenomesDbDAO

Selects from db the name of every dictionary

selectExp(Exp, String) - Method in class infogenomics.MySqlGenomesDbDAO

Selects from db all the basic information of experiment name and put them in Exp

selectExpLZ77BasicInfo(ExpLZ77, String) - Method in class infogenomics.MySqlGenomesDbDAO

Selects from db all the information of an Exp experiment

selectExpTypSeq(ExpTypSeq, String) - Method in class infogenomics.MySqlGenomesDbDAO

Selects from db all the information of an Exp experiment

selectExpTypSeqProf(ExpTypSeqProf, String) - Method in class infogenomics.MySqlGenomesDbDAO

Selects from db all the information of experiment called expName and put them in Exp exp

selectGenLen(String) - Method in class infogenomics.MySqlGenomesDbDAO

Selects from db the length of genome in experiment name

selectTypSeqs(String) - Method in class infogenomics.MySqlGenomesDbDAO

Selects from db all typical sequences of experiment name

setAheadWinLen(int[]) - Method in class experiments.ExpLZ77

setArg0(Exp) - Method in class webservices.ComputeExpIndexesExp

Sets the value of the arg0 property.

setArg0(String) - Method in class webservices.ComputeExpIndexesExp1

Sets the value of the arg0 property.

setArg0(ExpLZ77) - Method in class webservices.ComputeExpIndexesLZ

Sets the value of the arg0 property.

setArg0(ExpTypSeq) - Method in class webservices.ComputeExpIndexesTS

Sets the value of the arg0 property.

setArg0(ExpTypSeqProf) - Method in class webservices.ComputeExpIndexesTSP

Sets the value of the arg0 property.

setArg0(String) - Method in class webservices.ComputeExpIndexesTSP1

Sets the value of the arg0 property.

setArg0(String) - Method in class webservices.PermuteGen

Sets the value of the arg0 property.

setArg0(Exp) - Method in class webservices.SubSeqBaseNum

Sets the value of the arg0 property.

setArg1(int) - Method in class webservices.SubSeqBaseNum

Sets the value of the arg1 property.

setArg2(int) - Method in class webservices.ComputeExpIndexesTSP1

Sets the value of the arg2 property.

setArg2(int) - Method in class webservices.SubSeqBaseNum

Sets the value of the arg2 property.

setBasicIndexeAlreadyComputed(boolean) - Method in class experiments.Genome

setBasicIndexeAlreadyComputed(boolean) - Method in class webservices.Genome

Sets the value of the basicIndexeAlreadyComputed property.

setCompFactor(double) - Method in class compressors.LZ77v02

setCompFactor(double) - Method in class webservices.Lz77V02

Sets the value of the compFactor property.

setDescription(String) - Method in class othertools.Dictionary

setDicEntry(Lz77DictEntry) - Method in class webservices.TupleExt

Sets the value of the dicEntry property.

setDict(LZ77Dictionary) - Method in class compressors.LZ77v02

setDict(Lz77Dictionary) - Method in class webservices.Lz77V02

Sets the value of the dict property.

setDm(DataModel) - Method in class webservices.TolTest

Sets the value of the dm property.

setEncodedData(ArrayList<Tuple>) - Method in class compressors.LZ77v01

setEncodedData(ArrayList<TupleExt>) - Method in class compressors.LZ77v02

setfA(double) - Method in class experiments.Genome

setfA(double) - Method in class othertools.Dictionary

setFA(double) - Method in class webservices.Genome

Sets the value of the fa property.

setfC(double) - Method in class experiments.Genome

setfC(double) - Method in class othertools.Dictionary

setFC(double) - Method in class webservices.Genome

Sets the value of the fc property.

setfG(double) - Method in class experiments.Genome

setfG(double) - Method in class othertools.Dictionary

setFG(double) - Method in class webservices.Genome

Sets the value of the fg property.

setfT(double) - Method in class experiments.Genome

setfT(double) - Method in class othertools.Dictionary

setFT(double) - Method in class webservices.Genome

Sets the value of the ft property.

setGcContent(double) - Method in class experiments.Genome

setGcContent(double) - Method in class webservices.Genome

Sets the value of the gcContent property.

setGen(Genome) - Method in class experiments.Exp

setGen(Genome) - Method in class webservices.Exp

Sets the value of the gen property.

setGenArr(char[]) - Method in class experiments.Genome

setGenFile(File) - Method in class experiments.Genome

setGenFile(String) - Method in class webservices.Genome

Sets the value of the genFile property.

setGenFileName(String) - Method in class experiments.Genome

setGenFileName(String) - Method in class webservices.Genome

Sets the value of the genFileName property.

setGenLen(int) - Method in class experiments.Genome

setGenLen(int) - Method in class webservices.Genome

Sets the value of the genLen property.

setGenStr(String) - Method in class experiments.Genome

setGenStr(String) - Method in class webservices.Genome

Sets the value of the genStr property.

setJump(int[]) - Method in class experiments.ExpTypSeq

setLen(int) - Method in class webservices.Lz77DictEntry

Sets the value of the len property.

setLengths(int[]) - Method in class experiments.ExpTypSeqProf

setLens(int[]) - Method in class experiments.ExpTypSeqProf

setLookAheadWindowLen(int) - Method in class compressors.LZ77v01

setLookAheadWindowLen(int) - Method in class compressors.LZ77v02

setLookAheadWindowLen(int) - Method in class webservices.Lz77V02

Sets the value of the lookAheadWindowLen property.

setLZ77compressions(Vector<LZ77v02>) - Method in class experiments.ExpLZ77

setLz77TestId(int) - Method in class compressors.LZ77v02

setLz77TestId(int) - Method in class webservices.Lz77V02

Sets the value of the lz77TestId property.

setMaxLen(int) - Method in class othertools.Dictionary

setMaxWordIndex(int) - Method in class compressors.LZ77Dictionary

setMaxWordIndex(int) - Method in class webservices.Lz77Dictionary

Sets the value of the maxWordIndex property.

setMaxWordLen(int) - Method in class compressors.LZ77Dictionary

setMaxWordLen(int) - Method in class webservices.Lz77Dictionary

Sets the value of the maxWordLen property.

setMeanWordLen(double) - Method in class compressors.LZ77Dictionary

setMeanWordLen(double) - Method in class webservices.Lz77Dictionary

Sets the value of the meanWordLen property.

setMinLen(int[]) - Method in class experiments.ExpTypSeq

setMinLen(int) - Method in class othertools.Dictionary

setnA(int) - Method in class experiments.Genome

setNA(int) - Method in class webservices.Genome

Sets the value of the na property.

setName(String) - Method in class othertools.Dictionary

setnC(int) - Method in class experiments.Genome

setNC(int) - Method in class webservices.Genome

Sets the value of the nc property.

setNextChar(String) - Method in class webservices.TupleExt

Sets the value of the nextChar property.

setnG(int) - Method in class experiments.Genome

setNG(int) - Method in class webservices.Genome

Sets the value of the ng property.

setnLens(int) - Method in class experiments.ExpTypSeqProf

setNLens(int) - Method in class webservices.ExpTypSeqProf

Sets the value of the nLens property.

setNOccur(int) - Method in class webservices.Lz77DictEntry

Sets the value of the nOccur property.

setnT(int) - Method in class experiments.Genome

setNT(int) - Method in class webservices.Genome

Sets the value of the nt property.

setNumberOfWords(int) - Method in class compressors.LZ77Dictionary

setNumberOfWords(int) - Method in class webservices.Lz77Dictionary

Sets the value of the numberOfWords property.

setnWords(int) - Method in class othertools.Dictionary

setOccurences(int[]) - Method in class experiments.TolTest

setOffset(int) - Method in class webservices.TupleExt

Sets the value of the offset property.

setRawData(String) - Method in class compressors.LZ77v01

setRawData(String) - Method in class compressors.LZ77v02

setRawData(String) - Method in class webservices.Lz77V02

Sets the value of the rawData property.

setReturn(Exp) - Method in class webservices.ComputeExpIndexesExp1Response

Sets the value of the return property.

setReturn(Exp) - Method in class webservices.ComputeExpIndexesExpResponse

Sets the value of the return property.

setReturn(ExpLZ77) - Method in class webservices.ComputeExpIndexesLZResponse

Sets the value of the return property.

setReturn(ExpTypSeqProf) - Method in class webservices.ComputeExpIndexesTSP1Response

Sets the value of the return property.

setReturn(ExpTypSeqProf) - Method in class webservices.ComputeExpIndexesTSPResponse

Sets the value of the return property.

setReturn(ExpTypSeq) - Method in class webservices.ComputeExpIndexesTSResponse

Sets the value of the return property.

setReturn(String) - Method in class webservices.PermuteGenResponse

Sets the value of the return property.

setRowIndex(int) - Method in class webservices.DataModel

Sets the value of the rowIndex property.

setSearchWindowLen(int) - Method in class compressors.LZ77v01

setSearchWindowLen(int) - Method in class compressors.LZ77v02

setSearchWindowLen(int) - Method in class webservices.Lz77V02

Sets the value of the searchWindowLen property.

setSearchWinLen(int[]) - Method in class experiments.ExpLZ77

setStringLen(int) - Method in class webservices.TupleExt

Sets the value of the stringLen property.

setTests(Vector<TolTest>) - Method in class experiments.ExpTypSeqProf

setTol(double[]) - Method in class experiments.ExpTypSeq

setTol(double[]) - Method in class experiments.ExpTypSeqProf

setTol(double) - Method in class experiments.TolTest

setTol(double) - Method in class webservices.TolTest

Sets the value of the tol property.

setTypSeqs(Vector<double[]>) - Method in class experiments.ExpTypSeq

setValue(int) - Method in class webservices.TolTest

Sets the value of the value property.

setWord(String) - Method in class webservices.Lz77DictEntry

Sets the value of the word property.

setWords(Vector<String>) - Method in class othertools.Dictionary

setWrappedData(Object) - Method in class webservices.DataModel

Sets the value of the wrappedData property.

size() - Method in class compressors.LZ77Dictionary

storeguis - package storeguis

stringLen - Variable in class compressors.TupleExt

stringLen - Variable in class webservices.TupleExt

subSeqBaseNum(Exp, int, int) - Method in interface webservices.ExpProcessorServ

SubSeqBaseNum - Class in webservices

Java class for subSeqBaseNum complex type.

SubSeqBaseNum() - Constructor for class webservices.SubSeqBaseNum

SubSeqBaseNumResponse - Class in webservices

Java class for subSeqBaseNumResponse complex type.

SubSeqBaseNumResponse() - Constructor for class webservices.SubSeqBaseNumResponse