Serialized Form

Package analysis

Class analysis.ExportGui extends javax.swing.JFrame implements Serializable

Serialized Fields

parent

ExpSearchGui parent

fc

javax.swing.JFileChooser fc

outputFile

java.io.File outputFile

openedFile

java.io.File openedFile

buttonGroup1

javax.swing.ButtonGroup buttonGroup1

cancelFileButton

javax.swing.JButton cancelFileButton

exportB

javax.swing.JButton exportB

fileText

javax.swing.JTextField fileText

jLabel1

javax.swing.JLabel jLabel1

jLabel2

javax.swing.JLabel jLabel2

openFileButton

javax.swing.JButton openFileButton

selectFileButton

javax.swing.JButton selectFileButton

txtFormatRB

javax.swing.JRadioButton txtFormatRB

txtMatlabFormatRB

javax.swing.JRadioButton txtMatlabFormatRB

Class analysis.ExpSearchGui extends javax.swing.JFrame implements Serializable

Serialized Fields

exportB

javax.swing.JButton exportB

expsT

javax.swing.JTable expsT

jLabel1

javax.swing.JLabel jLabel1

jPanel1

javax.swing.JPanel jPanel1

jScrollPane1

javax.swing.JScrollPane jScrollPane1

showB

javax.swing.JButton showB

typSeqScatterPlotB

javax.swing.JButton typSeqScatterPlotB

Package analysis.analysisguis

Class analysis.analysisguis.ExpAnalysisGui extends javax.swing.JFrame implements Serializable

Serialized Fields

exp

Exp exp

baseFreqL

javax.swing.JLabel baseFreqL

baseFreqT

javax.swing.JTable baseFreqT

gcContentL

javax.swing.JLabel gcContentL

genFileL

javax.swing.JLabel genFileL

genLenL

javax.swing.JLabel genLenL

jLabel1

javax.swing.JLabel jLabel1

jScrollPane3

javax.swing.JScrollPane jScrollPane3

Class analysis.analysisguis.ExpLZ77AnalysisGui extends javax.swing.JFrame implements Serializable

Serialized Fields

exp

ExpLZ77 exp

LZ77TestDetailsB

javax.swing.JButton LZ77TestDetailsB

LZ77compT

javax.swing.JTable LZ77compT

baseFreqL

javax.swing.JLabel baseFreqL

baseFreqT

javax.swing.JTable baseFreqT

chartB1

javax.swing.JButton chartB1

gcContentL

javax.swing.JLabel gcContentL

genFileL

javax.swing.JLabel genFileL

genLenL

javax.swing.JLabel genLenL

jLabel4

javax.swing.JLabel jLabel4

jLabel5

javax.swing.JLabel jLabel5

jPanel2

javax.swing.JPanel jPanel2

jPanel4

javax.swing.JPanel jPanel4

jPanel5

javax.swing.JPanel jPanel5

jScrollPane3

javax.swing.JScrollPane jScrollPane3

jScrollPane4

javax.swing.JScrollPane jScrollPane4

xAxisC1

javax.swing.JComboBox xAxisC1

yAxisC1

javax.swing.JComboBox yAxisC1

Class analysis.analysisguis.ExpTypSeqAnalysisGui extends javax.swing.JFrame implements Serializable

Serialized Fields

exp

ExpTypSeq exp

baseFreqL

javax.swing.JLabel baseFreqL

baseFreqT

javax.swing.JTable baseFreqT

chartB

javax.swing.JButton chartB

gcContentL

javax.swing.JLabel gcContentL

genFileL

javax.swing.JLabel genFileL

genLenL

javax.swing.JLabel genLenL

jLabel2

javax.swing.JLabel jLabel2

jLabel3

javax.swing.JLabel jLabel3

jPanel1

javax.swing.JPanel jPanel1

jPanel2

javax.swing.JPanel jPanel2

jPanel3

javax.swing.JPanel jPanel3

jScrollPane2

javax.swing.JScrollPane jScrollPane2

jScrollPane3

javax.swing.JScrollPane jScrollPane3

typSeqT

javax.swing.JTable typSeqT

xAxisC

javax.swing.JComboBox xAxisC

yAxisC

javax.swing.JComboBox yAxisC

Class analysis.analysisguis.ExpTypSeqProfAnalysisGui extends javax.swing.JFrame implements Serializable

Serialized Fields

exp

ExpTypSeqProf exp

baseFreqL

javax.swing.JLabel baseFreqL

baseFreqT

javax.swing.JTable baseFreqT

gcContentL

javax.swing.JLabel gcContentL

genFileL

javax.swing.JLabel genFileL

genLenL

javax.swing.JLabel genLenL

jButton1

javax.swing.JButton jButton1

jLabel3

javax.swing.JLabel jLabel3

jScrollPane1

javax.swing.JScrollPane jScrollPane1

jScrollPane2

javax.swing.JScrollPane jScrollPane2

typSeqL

javax.swing.JLabel typSeqL

typSeqT

javax.swing.JTable typSeqT

Class analysis.analysisguis.LZ77DictAnalysisGui extends javax.swing.JFrame implements Serializable

Serialized Fields

nTest

int nTest

comp

LZ77v02 comp

aheadWinLenL

javax.swing.JLabel aheadWinLenL

aheadWinLenL2

javax.swing.JLabel aheadWinLenL2

chart1B

javax.swing.JButton chart1B

compFactorL

javax.swing.JLabel compFactorL

dictionaryT

javax.swing.JTable dictionaryT

jLabel1

javax.swing.JLabel jLabel1

jPanel1

javax.swing.JPanel jPanel1

jScrollPane4

javax.swing.JScrollPane jScrollPane4

maxLenL

javax.swing.JLabel maxLenL

meanLenL

javax.swing.JLabel meanLenL

searchWinLenL

javax.swing.JLabel searchWinLenL

testNumberL

javax.swing.JLabel testNumberL

wordNumL

javax.swing.JLabel wordNumL

Package experiments

Class experiments.TolTest extends java.lang.Object implements Serializable

Serialized Fields

tol

double tol

occurences

int[] occurences

Package expinputguis

Class expinputguis.DictionaryShow extends javax.swing.JFrame implements Serializable

Serialized Fields

dict

Dictionary dict

descriptionTA

javax.swing.JTextArea descriptionTA

dictNameL

javax.swing.JLabel dictNameL

dictionaryT

javax.swing.JTable dictionaryT

jLabel1

javax.swing.JLabel jLabel1

jLabel10

javax.swing.JLabel jLabel10

jScrollPane1

javax.swing.JScrollPane jScrollPane1

jScrollPane4

javax.swing.JScrollPane jScrollPane4

Class expinputguis.DictMatchInputGui extends javax.swing.JFrame implements Serializable

Serialized Fields

exp

Exp exp

closeBTN

javax.swing.JButton closeBTN

dictCB

javax.swing.JComboBox dictCB

errorFin

javax.swing.JTextField errorFin

errorIni

javax.swing.JTextField errorIni

errorStep

javax.swing.JTextField errorStep

errorTest

javax.swing.JToggleButton errorTest

genomeL

javax.swing.JLabel genomeL

jLabel10

javax.swing.JLabel jLabel10

jLabel2

javax.swing.JLabel jLabel2

jLabel8

javax.swing.JLabel jLabel8

jPanel1

javax.swing.JPanel jPanel1

shwoDictB

javax.swing.JButton shwoDictB

startBTN

javax.swing.JButton startBTN

typSeqProfBG

javax.swing.ButtonGroup typSeqProfBG

Class expinputguis.LZ77InputGui extends javax.swing.JFrame implements Serializable

Serialized Fields

exp

Exp exp

aheadWinLenFin

javax.swing.JTextField aheadWinLenFin

aheadWinLenIni

javax.swing.JTextField aheadWinLenIni

aheadWinLenStep

javax.swing.JTextField aheadWinLenStep

aheadWinTest

javax.swing.JToggleButton aheadWinTest

closeBTN

javax.swing.JButton closeBTN

genomeL

javax.swing.JLabel genomeL

jLabel14

javax.swing.JLabel jLabel14

jLabel15

javax.swing.JLabel jLabel15

jLabel16

javax.swing.JLabel jLabel16

jLabel17

javax.swing.JLabel jLabel17

jLabel2

javax.swing.JLabel jLabel2

searchWinLenFin

javax.swing.JTextField searchWinLenFin

searchWinLenIni

javax.swing.JTextField searchWinLenIni

searchWinLenStep

javax.swing.JTextField searchWinLenStep

searchWinTest

javax.swing.JToggleButton searchWinTest

startBTN

javax.swing.JButton startBTN

Class expinputguis.TypSeqInputGui extends javax.swing.JFrame implements Serializable

Serialized Fields

exp

Exp exp

closeBTN

javax.swing.JButton closeBTN

genomeL

javax.swing.JLabel genomeL

jLabel10

javax.swing.JLabel jLabel10

jLabel11

javax.swing.JLabel jLabel11

jLabel12

javax.swing.JLabel jLabel12

jLabel13

javax.swing.JLabel jLabel13

jLabel2

javax.swing.JLabel jLabel2

jLabel8

javax.swing.JLabel jLabel8

jLabel9

javax.swing.JLabel jLabel9

jPanel1

javax.swing.JPanel jPanel1

jumpFin

javax.swing.JTextField jumpFin

jumpIni

javax.swing.JTextField jumpIni

jumpStep

javax.swing.JTextField jumpStep

jumpTest

javax.swing.JToggleButton jumpTest

minLenFin

javax.swing.JTextField minLenFin

minLenIni

javax.swing.JTextField minLenIni

minLenStep

javax.swing.JTextField minLenStep

minLenTest

javax.swing.JToggleButton minLenTest

startBTN

javax.swing.JButton startBTN

tolFin

javax.swing.JTextField tolFin

tolIni

javax.swing.JTextField tolIni

tolStep

javax.swing.JTextField tolStep

tolTest

javax.swing.JToggleButton tolTest

typSeqProfBG

javax.swing.ButtonGroup typSeqProfBG

Class expinputguis.TypSeqProfInputGui extends javax.swing.JFrame implements Serializable

Serialized Fields

exp

Exp exp

closeBTN

javax.swing.JButton closeBTN

genomeL

javax.swing.JLabel genomeL

jLabel18

javax.swing.JLabel jLabel18

jLabel19

javax.swing.JLabel jLabel19

jLabel2

javax.swing.JLabel jLabel2

jLabel20

javax.swing.JLabel jLabel20

jPanel1

javax.swing.JPanel jPanel1

startBTN

javax.swing.JButton startBTN

typSeqLenFin

javax.swing.JTextField typSeqLenFin

typSeqLenIni

javax.swing.JTextField typSeqLenIni

typSeqLenStep

javax.swing.JTextField typSeqLenStep

typSeqNlens

javax.swing.JTextField typSeqNlens

typSeqProfBG

javax.swing.ButtonGroup typSeqProfBG

typSeqProfLengthsRB

javax.swing.JRadioButton typSeqProfLengthsRB

typSeqProfNtestRB

javax.swing.JRadioButton typSeqProfNtestRB

typSeqTolFin

javax.swing.JTextField typSeqTolFin

typSeqTolIni

javax.swing.JTextField typSeqTolIni

typSeqTolStep

javax.swing.JTextField typSeqTolStep

typSeqTolTest

javax.swing.JToggleButton typSeqTolTest

Package infogenomics

Class infogenomics.GenomeSaveGui extends javax.swing.JFrame implements Serializable

Serialized Fields

fc

javax.swing.JFileChooser fc

genFile

java.io.File genFile

openedFile

java.io.File openedFile

s

java.lang.String s

exp

Exp exp

cancelFileButton

javax.swing.JButton cancelFileButton

fileText

javax.swing.JTextField fileText

jLabel1

javax.swing.JLabel jLabel1

openFileButton

javax.swing.JButton openFileButton

saveB

javax.swing.JButton saveB

selectFileButton

javax.swing.JButton selectFileButton

Class infogenomics.Index extends javax.swing.JFrame implements Serializable

Serialized Fields

fc

javax.swing.JFileChooser fc

genFile

java.io.File genFile

openedFile

java.io.File openedFile

TypSeqB

javax.swing.JButton TypSeqB

basicIndexB

javax.swing.JButton basicIndexB

cancelFileButton

javax.swing.JButton cancelFileButton

dictGenB

javax.swing.JButton dictGenB

dictionaryMatchingB

javax.swing.JButton dictionaryMatchingB

expSearchB

javax.swing.JButton expSearchB

fileText

javax.swing.JTextField fileText

genPermutationB

javax.swing.JButton genPermutationB

jLabel1

javax.swing.JLabel jLabel1

jPanel1

javax.swing.JPanel jPanel1

jPanel2

javax.swing.JPanel jPanel2

jPanel3

javax.swing.JPanel jPanel3

lz77B

javax.swing.JButton lz77B

openFileButton

javax.swing.JButton openFileButton

selectFileButton

javax.swing.JButton selectFileButton

typSeqProfileB

javax.swing.JButton typSeqProfileB

Package othertools

Class othertools.DictionaryGenerator extends javax.swing.JFrame implements Serializable

Serialized Fields

fc

javax.swing.JFileChooser fc

genFile

java.io.File genFile

openedFile

java.io.File openedFile

buttonGroup1

javax.swing.ButtonGroup buttonGroup1

cancelFileButton

javax.swing.JButton cancelFileButton

cancelFileButton1

javax.swing.JButton cancelFileButton1

fAT

javax.swing.JTextField fAT

fCT

javax.swing.JTextField fCT

fGT

javax.swing.JTextField fGT

fTT

javax.swing.JTextField fTT

fileText

javax.swing.JTextField fileText

fileText1

javax.swing.JTextField fileText1

generateB

javax.swing.JButton generateB

jLabel1

javax.swing.JLabel jLabel1

jLabel2

javax.swing.JLabel jLabel2

jLabel3

javax.swing.JLabel jLabel3

jLabel5

javax.swing.JLabel jLabel5

jLabel6

javax.swing.JLabel jLabel6

jLabel7

javax.swing.JLabel jLabel7

jLabel8

javax.swing.JLabel jLabel8

jLabel9

javax.swing.JLabel jLabel9

jRadioButton2

javax.swing.JRadioButton jRadioButton2

jRadioButton3

javax.swing.JRadioButton jRadioButton3

maxWordLenT

javax.swing.JTextField maxWordLenT

minWordLenT

javax.swing.JTextField minWordLenT

nWordT

javax.swing.JTextField nWordT

openFileButton

javax.swing.JButton openFileButton

openFileButton1

javax.swing.JButton openFileButton1

randomGenRB

javax.swing.JRadioButton randomGenRB

selectFileButton

javax.swing.JButton selectFileButton

selectFileButton1

javax.swing.JButton selectFileButton1

Class othertools.DictionarySave extends javax.swing.JFrame implements Serializable

Serialized Fields

dictionary

Dictionary dictionary

descriptionTA

javax.swing.JTextArea descriptionTA

dictNameT

javax.swing.JTextField dictNameT

dictionaryT

javax.swing.JTable dictionaryT

jButton1

javax.swing.JButton jButton1

jLabel1

javax.swing.JLabel jLabel1

jLabel10

javax.swing.JLabel jLabel10

jLabel4

javax.swing.JLabel jLabel4

jScrollPane1

javax.swing.JScrollPane jScrollPane1

jScrollPane4

javax.swing.JScrollPane jScrollPane4

saveB

javax.swing.JButton saveB

Package storeguis

Class storeguis.ExpStoreGui extends javax.swing.JFrame implements Serializable

Serialized Fields

exp

Exp exp

baseFreqL

javax.swing.JLabel baseFreqL

baseFreqT

javax.swing.JTable baseFreqT

discardBTN

javax.swing.JButton discardBTN

expDescTXTA

javax.swing.JTextArea expDescTXTA

expNameTXT

javax.swing.JTextField expNameTXT

gcContentL

javax.swing.JLabel gcContentL

genFileL

javax.swing.JLabel genFileL

genLenL

javax.swing.JLabel genLenL

jLabel1

javax.swing.JLabel jLabel1

jLabel2

javax.swing.JLabel jLabel2

jScrollPane1

javax.swing.JScrollPane jScrollPane1

jScrollPane3

javax.swing.JScrollPane jScrollPane3

saveBTN

javax.swing.JButton saveBTN

Class storeguis.LZ77ExpStoreGui extends javax.swing.JFrame implements Serializable

Serialized Fields

exp

ExpLZ77 exp

LZ77TestDetailsB

javax.swing.JButton LZ77TestDetailsB

LZ77compL

javax.swing.JLabel LZ77compL

LZ77compT

javax.swing.JTable LZ77compT

baseFreqL

javax.swing.JLabel baseFreqL

baseFreqT

javax.swing.JTable baseFreqT

discardBTN

javax.swing.JButton discardBTN

expDescTXTA

javax.swing.JTextArea expDescTXTA

expNameTXT

javax.swing.JTextField expNameTXT

gcContentL

javax.swing.JLabel gcContentL

genFileL

javax.swing.JLabel genFileL

genLenL

javax.swing.JLabel genLenL

jLabel1

javax.swing.JLabel jLabel1

jLabel2

javax.swing.JLabel jLabel2

jScrollPane1

javax.swing.JScrollPane jScrollPane1

jScrollPane3

javax.swing.JScrollPane jScrollPane3

jScrollPane4

javax.swing.JScrollPane jScrollPane4

saveBTN

javax.swing.JButton saveBTN

saveWordPosCB

javax.swing.JCheckBox saveWordPosCB

Class storeguis.LZ77TestDetailGui extends javax.swing.JFrame implements Serializable

Serialized Fields

nTest

int nTest

comp

LZ77v02 comp

aheadWinLenL

javax.swing.JLabel aheadWinLenL

aheadWinLenL2

javax.swing.JLabel aheadWinLenL2

compFactorL

javax.swing.JLabel compFactorL

dictionaryT

javax.swing.JTable dictionaryT

jScrollPane4

javax.swing.JScrollPane jScrollPane4

maxLenL

javax.swing.JLabel maxLenL

meanLenL

javax.swing.JLabel meanLenL

searchWinLenL

javax.swing.JLabel searchWinLenL

testNumberL

javax.swing.JLabel testNumberL

wordNumL

javax.swing.JLabel wordNumL

Class storeguis.TypSeqExpStoreGui extends javax.swing.JFrame implements Serializable

Serialized Fields

exp

ExpTypSeq exp

baseFreqL

javax.swing.JLabel baseFreqL

baseFreqT

javax.swing.JTable baseFreqT

discardBTN

javax.swing.JButton discardBTN

expDescTXTA

javax.swing.JTextArea expDescTXTA

expNameTXT

javax.swing.JTextField expNameTXT

gcContentL

javax.swing.JLabel gcContentL

genFileL

javax.swing.JLabel genFileL

genLenL

javax.swing.JLabel genLenL

jLabel1

javax.swing.JLabel jLabel1

jLabel2

javax.swing.JLabel jLabel2

jScrollPane1

javax.swing.JScrollPane jScrollPane1

jScrollPane2

javax.swing.JScrollPane jScrollPane2

jScrollPane3

javax.swing.JScrollPane jScrollPane3

saveBTN

javax.swing.JButton saveBTN

typSeqL

javax.swing.JLabel typSeqL

typSeqT

javax.swing.JTable typSeqT

Class storeguis.TypSeqProfExpStoreGui extends javax.swing.JFrame implements Serializable

Serialized Fields

exp

ExpTypSeqProf exp

baseFreqL

javax.swing.JLabel baseFreqL

baseFreqT

javax.swing.JTable baseFreqT

discardBTN

javax.swing.JButton discardBTN

expDescTXTA

javax.swing.JTextArea expDescTXTA

expNameTXT

javax.swing.JTextField expNameTXT

gcContentL

javax.swing.JLabel gcContentL

genFileL

javax.swing.JLabel genFileL

genLenL

javax.swing.JLabel genLenL

jLabel1

javax.swing.JLabel jLabel1

jLabel2

javax.swing.JLabel jLabel2

jLabel3

javax.swing.JLabel jLabel3

jScrollPane1

javax.swing.JScrollPane jScrollPane1

jScrollPane2

javax.swing.JScrollPane jScrollPane2

jScrollPane3

javax.swing.JScrollPane jScrollPane3

saveBTN

javax.swing.JButton saveBTN

typSeqL

javax.swing.JLabel typSeqL

typSeqT

javax.swing.JTable typSeqT